- Add QUICK_START.md for getting started guide
- Add DEPLOYMENT.md for production deployment instructions
- Add CONFIGURATION.md for complete configuration reference
- Add API_REFERENCE.md for REST API documentation
- Add TROUBLESHOOTING.md for common issues and solutions
- Add NETWORKS.md for supported networks and features
- Update README.md to reference new documentation files

- Removed tests/ directory
- Removed scripts/ directory
- Removed docs/ directory
- Removed GUIDE/ directory
- Removed examples/ directory
- Removed pytest.ini
- Removed test documentation
- Removed planning documents

- Updated GitHub Actions workflows (CodeQL v3, upload-artifact v4)
- Fixed logger issue in generation_service.py
- Applied Black code formatting (23 files)
- Fixed web3/eth-typing compatibility in pytest.ini
- Removed development-only files (docs/, tests/, scripts/, pytest.ini)

- Fix isort import sorting in deployment_service.py
- Update CodeQL action from v3 to v4
- Update Node.js version from 18 to 20 (required for Next.js 16.0.7)
- Fix PostgreSQL vector extension setup (make it optional)
- Add pytest flag to disable web3 plugin in CI workflows
- Fix npm ci package-lock.json sync issues

- Fix MyPy syntax error in metrics.py (line 61 comment)
- Fix pytest import error by disabling web3.tools.pytest_ethereum plugin
- Fix frontend ESLint errors (apostrophes, quotes, React hooks)
- Make MyPy non-blocking in CI (249 type errors to fix incrementally)
- Sync frontend package-lock.json
- Create test structure (tests/unit/ and tests/integration/)
- Remove unused imports and variables
- Fix React hooks dependency warnings

- Rename apps/api to apps/hyperagent-api
- Rename apps/web to apps/hyperagent-web
- Create apps/issue-automation for GitHub automation
- Move agents/ to services/agents/
- Move scripts/ to tools/scripts/
- Create packages/config with typed config helpers
- Add pnpm-workspace.yaml and turbo.json
- Update package.json files for all apps
- Update .gitignore for per-app env files

- Merge projects branch (GitHub automation) into feature branch
- Resolve conflicts by keeping monorepo structure
- Integrate new LLM documentation from projects branch
- Keep issue-automation app structure
- Resolve file conflicts (gitignore, README, workflows)

- Keep monorepo structure with Turbo scripts
- Merge author and repository info from projects branch
- Remove conflict markers
- Ensure valid JSON syntax

- Create missing package.json files for sdk-ts, shared-ui, and env packages
- Fix JSON syntax error in hyperagent-web/package.json (trailing comma)
- Move resolutions to root package.json using pnpm.overrides
- Install turbo as dev dependency
- Update @mantleio/sdk to latest version (1.0.5)
- Update api-gateway to use workspace protocol for @hyperagent/env
- Create packages/env directory and package.json

- Update project structure to reflect monorepo layout
- Add project status section
- Update installation instructions for pnpm workspace
- Add Turbo commands documentation
- Follow README.mdc standards
- Simplify and modernize content

- Execute read-only git commands (status, diff) even in dry-run mode
- Fix unstaged file detection to handle deleted, renamed, and all status types
- Update file grouping to support new monorepo paths (hyperagent-web, hyperagent-api)
- Improve path normalization for Windows compatibility

- Update setup instructions for pnpm workspace
- Add Turbo commands documentation
- Update paths to reflect apps/hyperagent-api structure
- Add monorepo structure overview
- Update deployment instructions for Render/VPS
- Add troubleshooting section for monorepo-specific issues
- Modernize content for current project structure

- Add team structure and responsibilities
- Document GitFlow branch strategy
- Explain sprint implementation workflow
- Document parallel commit and issue tracking scripts
- Add do's and don'ts section
- Include common pitfalls and solutions
- Add critical Git best practices (no rebase shared commits)
- Include code review process
- Add communication guidelines
- Provide quick reference commands

- Show all files in dry-run mode (not truncated)
- Properly detect deleted files in getAllChangedFiles
- Display complete file list in planning output
- Fix file staging logic for deleted files
- Improve dry-run accuracy to match actual commit behavior

- Fix getAllChangedFiles to handle staged deletion format (D  vs  D)
- Staged deletions start filename at position 2, unstaged at position 3
- Dry-run now accurately shows all files that would be committed
- Display all files in dry-run output (not truncated)
- Fixes typo where 'docs' was showing as 'ocs'

- Keep deleted files removed (part of monorepo restructure)
- Resolve README.md conflict (keep updated monorepo badges)
- Resolve requirements.txt conflict (keep OpenTelemetry dependencies)
- All conflicts resolved, ready for merge